NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10002508

Scaffold Ga0307507_10002508


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10002508 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38326
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F007022Metagenome359Y
F014479Metagenome / Metatranscriptome262Y
F020829Metagenome221Y
F080892Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000250810F000247AGGVYTYVIYITLNYKRTPCIEVAYTNYLTSSLNISISKTLVPSSSILFTHLFIDRKLYYNSSLSLNKSIDPTSTSL
Ga0307507_1000250812F007022N/AMYFNYRKDSYFATSCLELKDMGNIKEIEKEETPNELGKEEP
Ga0307507_100025082F080892AGAAGMPVINTTEDLLLLAVSTCADPLDVEILVINIIEDLLLLAVSTYRDSLVLA
Ga0307507_100025084F014479AGTAGVSVIKGIYIFLSGNRRYIRVFKLLVHLGIRARLAILPRGLYCRNLLLLEGPSYLNSTAFYKVSTEFLFRLLRSFLREE
Ga0307507_100025088F020829AGGAVPLVSSKLITNIIFFICGTPLTLGLYILIIYTGPLYIWIVITIISRLTAYYNYKDRITALLIIKHIYIAAFGLYRS
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