Scaffold Ga0307507_10002763

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307507_10002763

Scaffold Ga0307507_10002763

Overview

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10002763 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	35868
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (82.35%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Chaetothyriomycetidae → Chaetothyriales → unclassified Chaetothyriales → Chaetothyriales sp. CBS 134920	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005943	Metagenome	385	Y
F056201	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000276317	F005943	AGG	MSRNAGNGYKAYVFGESTRRCAIDCKGRGRKEVIYPRVADISCTRGVRKSTGFSYRGPCGRVP
Ga0307507_100027636	F056201	N/A	MAPSRSTGLRGLNTLTRKIPYGRIPRQIIVVGVPREYLSMAHRGKEMN
Ga0307507_100027637	F005943	AGG	MSWDAGNGYKAYVFGESTRRCAIDRKGRGRKEVIYPRVADISCTRGIRKSIGFSYRGPCGWVP

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