NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10002853

Scaffold Ga0307507_10002853


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10002853 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34997
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F002793Metagenome529Y
F056201Metagenome137Y
F064575Metagenome128Y
F093556Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000285310F064575AGGAMAPKASLSKRPASTQEEHEVQLGLEIKDNDDVIGVYKQIRALAAN
Ga0307507_100028532F000630GAGMGVKGTEVDLGKGNPSHSIGNAMGGKYLRAPRGPNKGRKYNGNTLKNRNNRTKRLALLGRCPSR
Ga0307507_100028534F056201N/AMAPSGSIELRGPNTLTRKIPYRRMPRGIIVVELSREYLSIAYRGKEKN
Ga0307507_100028536F093556AGTAGMAYPTTPIQYSFAINSLPTKLGSNILDSKFNNNVLNTLVPNLMPNFNKLELLGYKV
Ga0307507_100028537F002793N/AMDIIPLVDNLEILEIFKDKDNKKGDSIINALSIIL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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