NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10002889

Scaffold Ga0307507_10002889


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10002889 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34634
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F021494Metagenome218Y
F066630Metagenome126Y
F080892Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000288912F080892AGAAGMPVINIIKDLLSLAASTYIDPLDVETLVINIIEDLLLLAASTYGDPLVLV
Ga0307507_1000288916F021494N/AMELFISVSYVPTSLSKSESIIASSSSPVLTSWLYAPYKPAIYVMFAILNLILNCSGLKLTIAVYRGLPTGRSLPCVLYVPYIPIWSDNVI
Ga0307507_1000288918F000630GAGMGVKGIEADLGKGNLSYSIGNTIGGKYLRALKGPNKGRKYNSNTLKDRNNRTKRLASLGRYPSR
Ga0307507_1000288919F066630N/AMLLAASTENYNILLLTQKGLKAATWWLISQNMLDQFQIAKEIAIESKGVSNRRPLITLQE
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