NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307507_10002912

Scaffold Ga0307507_10002912


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10002912 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34470
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F002220Metagenome581Y
F006298Metagenome376Y
F050242Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100029121F006298N/AMERRLVIKDSNGLCTIYLTILSKVLVGRVVLNFYIHKELFSLVNLTLKIFFAFILNQEALEVGYSNLTISNISCALAKLIIYLLSSVKRVPS
Ga0307507_100029122F002220AGGMHPLKNNSVVKLSFSFNFAIRFAFTSLSSLRTKNWSSPKIIILLVYMLTIPNRVPIVIIRKQGLNIKVVIKSFSL
Ga0307507_100029125F050242GGAMRLCVPTGTAKDIGHFSLSSREVVRINFKLVLQLKLPIIKYRVSSVYKQ
Ga0307507_100029128F000247N/AMRITLNYKRTLYTEVAYTNYLTSSLNISISKTPVPSSGVLFTYLFIDRKLYYNSGLSLNKSVDLTSTGL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.