NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10002967

Scaffold Ga0307507_10002967


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10002967 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34053
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016500Metagenome246Y
F053802Metagenome140Y
F064533Metagenome128Y
F080892Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100029671F016500GGAMVEVIDAKKGLDTFYYIRGFLITYHLNLLRVNFNSFYTNDKPKVLYLFYSEYIFF
Ga0307507_1000296710F080892N/AMLVINIIENLLLLVASTHIDTLDIKILVINIIENLLLLAASTYKDPLVLV
Ga0307507_100029673F053802GGAMRNYILPAAVKRMGLLYRQKEHLYPLITISGDQIAYRGGIINLKTGLI
Ga0307507_100029677F064533N/AMGSPIRPLYPRIGIGLGSSLRGVFKKLASFTAYYVSIKAKAFALELAKVEVKT
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