NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10002982

Scaffold Ga0307507_10002982


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10002982 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33958
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002220Metagenome581Y
F005943Metagenome385Y
F006298Metagenome376Y
F035578Metagenome171Y
F096933Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100029821F006298N/AMERRLVIKNSNGLYTIYLTILSKVLVKKVVLNFYIYKKLFGLINLTLKIFFAFILNQEALKVGYSNLIISNVLCTLAKLIIYLFLSIKRVPS
Ga0307507_1000298213F002220N/AMESLFRERMHILKSNGIIRLSLSFSFTIRFTFTSLSSLRAKNWLSPKIIILLVYMPIILNRVPVVVIRK
Ga0307507_100029822F035578N/AMVARVGDIVEGIINVNYKATMEVLMEVYLKTINRRNAMFIRS
Ga0307507_100029823F005943GGAMYVFEESTRRCAIDRKGRGRKEVMYLRVANISCTQGVRESMGLSYRGPCGRVP
Ga0307507_100029824F096933AGGMHIIIIVTSGGITKAIGDLFKKIFLVLSVVLGKNSSVFLELDIELVK
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Institute for Fundamental Biomedical Research
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