NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10003337

Scaffold Ga0307507_10003337


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10003337 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31404
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F003725Metagenome471Y
F008599Metagenome330Y
F056201Metagenome137Y
F061416Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100033371F002555AGTAGMLEIFKDEDKEEGDGIIDALSIMLRLLGEELEEAS
Ga0307507_100033372F056201N/AMAPSGSIELRGPNTLTRKIPYRRIPRWIIVVELFKKYLSMARRGKEIN
Ga0307507_100033373F061416N/AMQEGAKLVIPMDQVAYIGLFLTGRALKWFKSYLTKI
Ga0307507_100033376F003725N/AMENLINLYNYLKKIAELVQARIKRYYNSRRFKGLDLKEGDKV
Ga0307507_100033377F008599AGTAGMGLLYRQKEYLYLLIIILGDLIAYKGGIINLKIEPI
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