NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10003861

Scaffold Ga0307507_10003861


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10003861 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27932
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007022Metagenome359Y
F016500Metagenome246Y
F019458Metagenome229Y
F035578Metagenome171Y
F064278Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100038611F035578GGAMVARVEDIVEDIINVNYKVIVEVLMEVYLKTINRRNTMFIRS
Ga0307507_100038612F019458N/AMKLDIFNKPKESSIFSFNDRYSANVFYSIMPDTRAAGVSIAGEP
Ga0307507_100038614F016500N/AMDKLIVEVIETKKGLDAFYSIRGFLVIDRLNLLRVNFNSFYTNNKPKVLYTFYSKFIFPNINL
Ga0307507_100038615F064278N/AMPLANTYYNTLINPTIVICFNYRKNSYFTIFCLKLKNIGNIKEIEEEKISNKLGKEIP
Ga0307507_100038616F016500N/ALYQRLSYNPIIIDKLIVEITKAKKGLDALYSIRGFLVTDRFNLLRVNFNSFYTNNKPKVLYTFYSKFAFLNINL
Ga0307507_100038618F007022N/AMVTCFNCGKDSYFTTSCLELKDIGNIKEIEEEEISNKLGKEEP
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