NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10003896

Scaffold Ga0307507_10003896


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10003896 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27706
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F020829Metagenome221Y
F021494Metagenome218Y
F064533Metagenome128Y
F075511Metagenome118Y
F093556Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000389612F093556N/AMAYPTAPMQYPPAINPLPAELGSNILDSEFNDDILDTLVPDLVPNLNKLELLGREV
Ga0307507_1000389613F075511AGGMPASETLTELKLRILTGLVIGSLIITITRVYIVVYTRSLIIGLIGRKYGYSLYY
Ga0307507_100038965F021494AGGMSYIPTSASISKSIIVSSSSPSLTSRLYTLYKSAANIRFAAFSLILNYPGLKLAIAVYRGLPIGRSLPCVPCDPYVPI
Ga0307507_100038966F020829N/AMPLVSSKLITNIIFSVYGTPLTLGLYTLIIYTGPLYVWIVITAISRLTACYNHKDRLTALLIIKHIYMAAFGSYRSWNP
Ga0307507_100038968F000630GAGMGVKGTEADLGKRNLSHGIVNAIGGKYLRALRRPNKGRKYNSNTLKNRDNRTKRLALLGRCSSKQPKI
Ga0307507_100038969F064533GGAMVIIGSPTHLLYLQIGISLGSSSKGAFKKSASFIAHFVLIKVKAFAPKLAKVEVKT
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