NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10004238

Scaffold Ga0307507_10004238


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10004238 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25898
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F003725Metagenome471Y
F035578Metagenome171Y
F038017Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100042382F035578N/AMIITGLIEYIVAGVGDTVEGMININYKATIEVLMEVYLKTINKRNAIFVRS
Ga0307507_100042385F002555AGTAGLEILGIFKDKDKEEGDGITDALSIILRLLREELAEASWLI
Ga0307507_100042386F003725N/AMSSTAKQRMEILINLYADLIKTAKLVQEQIKRYYNTKRSKGPDLKEGDKV
Ga0307507_100042388F038017GAGVVRLTRYRFKLKNKNKLKVNLKYIAHYTLLWIAYMDNTCNIYRALKDKNQKYLVRIY
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