 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033179 Open in IMG/M |
| Scaffold ID | Ga0307507_10005501 Open in IMG/M |
| Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20726 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (53.85%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oregon | |||||||
| Coordinates | Lat. (o) | 44.5508 | Long. (o) | -123.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006298 | Metagenome | 376 | Y |
| F008074 | Metagenome | 339 | Y |
| F015315 | Metagenome | 255 | Y |
| F019457 | Metagenome | 229 | Y |
| F035578 | Metagenome | 171 | Y |
| F093556 | Metagenome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307507_1000550110 | F006298 | N/A | MERRLVVKDSNGLCTIYLTILGEVLVGRVVLNFHIYKKLFGLVNLTLKIFFAFILNQEALEVGYSNLIISNVSCALAKLIIYLLLSVKRVPS |
| Ga0307507_1000550111 | F035578 | GGA | MVAGVGDIAEGTINVNYKAIVEVLMEVYLKIINRRNTMFIKSQIAG |
| Ga0307507_100055013 | F093556 | N/A | LESDSSGLTAYPTAPVQHPPAINPLPAELGSNILDSEFDNNVLDTLVPNLVPNFNKLELLSCEV |
| Ga0307507_100055014 | F015315 | AGG | METCSCYKEWWFQIGLAIEGDNIGVYKACVKDANSLKDPTLPPLFGESNGLNLGPIPSFLLILTAVEELLIARVYVYL |
| Ga0307507_100055016 | F019457 | GGA | MQTNNIIILGDDQFLALKEDKLVKANLIAKLKEKLNLITLLLFNRCILSLNEDSIALR |
| Ga0307507_100055018 | F008074 | GAGG | LEYWLTAKIYNVNNNTEVEVVVIFKGELKSARGLLVYLAVIAVLYKMLNCLSLDFMTCSLKNPKQSIN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |