NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10005744

Scaffold Ga0307507_10005744


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10005744 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19988
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F014479Metagenome / Metatranscriptome262Y
F038017Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100057441F014479N/AVTVVEGVCVFLRVVGNCRCARVFKLLAHLGVRARLAVLPRGLYCRNLLLLEGSSCLSATAFHKVFMEFLFRSSRDF
Ga0307507_100057442F000247AGGVYTYAIYIALNCKRTPYTEVARTSCLAGSLNIFIGKTLVPSSNVLFTHPFVDGKLYYNGGLSLNKSIDPTSTGL
Ga0307507_100057447F038017GAGVVRLTRYRFKLKNKNKLKVDLKHVVYYTLLWIACVDNIYNIYRAPKDKNRKYLVKIY
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