Scaffold Ga0307507_10006754

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307507_10006754

Scaffold Ga0307507_10006754

Overview

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10006754 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	17258
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F041034	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100067541	F000630	GGAG	MGVKGIEVDLGKGNLSHSIGNAIGGKYLRAPRGPNKGKKYNSNTLKDRNNRTKRLALLSGYPSG
Ga0307507_100067543	F000630	GGA	MLERQIGVKGTEADLGKGNPSRSIGNTIGGKYLRALRGPNKGRKYNGNTLKNRNNRTKRLALLGRCPSR
Ga0307507_100067544	F041034	N/A	VDISGNLILVEFGGILGLVELGGLFRYRVDISRNFRLVDPGGFFRF

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