NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10006921

Scaffold Ga0307507_10006921


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10006921 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16890
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F002220Metagenome581Y
F020829Metagenome221Y
F021494Metagenome218Y
F032886Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100069211F002220N/AFRERMHLLKSNSIVKLSFSFSFAIRFAFTSSSSLRAKNWSSPKIIVLLVYIPTIPNGVPVVVIRKQGLNIEVVIKSFSL
Ga0307507_100069213F021494AGGVSYIPTSASISKSVIVSSSSPSLTGRLYALYRLAINIRFATFSLILNYPGLKLAIAIHRGLPIGRPLPYIPYNLYVPIQSGDITRRHF
Ga0307507_100069214F020829AGGAVPLVSSKLITNIIFSIYGTPLTLGLYTLIICTGPLYVWIIITTISKLTACYNYKDRLTALLIIKHTYMAAFGLYRSWNP
Ga0307507_100069215F000630N/AMLERRIGVKGIEANLDKRNLSHGIVNAIGGEYLRALKRPNKGRKYNSNTLKNRDNRTKRLALLGRCSSR
Ga0307507_100069216F032886N/AMELEYLLINSNKEEREANWERLNLNNVIEVETKTTIERGLVTDVIILLDIISIAL
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