NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10007883

Scaffold Ga0307507_10007883


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10007883 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15083
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050242Metagenome145Y
F067329Metagenome / Metatranscriptome125Y
F081096Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100078831F081096N/AMHIYRGGYRGNIGQLDKDLIVRDTGQLIKGGDISLVSRRGESRLSGIGPSVSTAPLLQDTVGLL
Ga0307507_100078832F081096N/AMHTYRGGYRGNTGQLDKDLTVKDIGQLIKGGDTSLVSRRGESRLFSIGPSISTAPLLQDTVGLL
Ga0307507_100078835F050242GGAMHLCVPTSTAKDVGHFSLGSREVVYISFKLVLQLKLLIIKYRVSSVYK
Ga0307507_100078837F067329AGGVLRAVIVNVLGIANITDIADVADIVMDIADIATDIVNIADIVNIWILRWR
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