 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033181 Open in IMG/M |
| Scaffold ID | Ga0272431_10000039 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 274542 |
| Total Scaffold Genes | 320 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 84 (26.25%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.6 | Long. (o) | 161.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F009580 | Metagenome | 315 | Y |
| F038484 | Metagenome | 165 | Y |
| F071806 | Metagenome | 121 | Y |
| F086377 | Metagenome | 110 | Y |
| F087979 | Metagenome | 109 | Y |
| F089602 | Metagenome | 108 | Y |
| F102181 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272431_10000039105 | F087979 | N/A | VKEKNKSSTFIYMNXAELELNNSFIDLKLQKFAHMTEMIETELLKLN |
| Ga0272431_10000039277 | F038484 | N/A | MCIARMLSAFXKSLHISIILLLRCNLCAEIALTSAMHSLYISHRXFHXSLXYCVIVMLLLIEIIVKKKVHHLHLNCIFASSXMKTFRSIIFLMMSEREMIQLTFVKXTHISLHACLISCVQLLTQLCNVILFCNMFKXTCSELMYVFVSRVSMFTFLNASATXCKVXFXSVSSLHSLLNSLSFLSCXCQIDALNAISDLTTAEYTCLAFVKIALHVKISRXLSISILVTXFIFICQRCMSHCSFMFSCTSKTRTSDFDLITEFSICMLVIMLNLFDFLVKCVSSYFSDANVASXMQAHFAQTSSAICKEXQRQILTLLMINILNIHLISCFRFASLLTDAYS |
| Ga0272431_10000039285 | F071806 | N/A | MKFQSQIIILDSVQLRLFLIISALFQILVFMNLEIEEFNIKDVKFQLNQDILNLDEDFADIFTQTLXK |
| Ga0272431_10000039296 | F009580 | N/A | MIKVKMKRLKLVDKMICIQISERDLAQKLNFSCRQXDFFIYIDDITVVNVHDIQSEKLLIXAFFNNFAQMLQFAVVAQLSLVADFLDLRNDQNLILNDDNDKA |
| Ga0272431_10000039297 | F001951 | N/A | MTKLKFIDSSRNKKEKDENTVETIITEMMIFKFEKLLIDAKIFLTLINETMMKMKXDX |
| Ga0272431_10000039298 | F089602 | N/A | MKDEXLSFIKISSEENNNLNEIIDIMLQTVNQXKIFHQRTFFLLIKEIVVVNKAIHVLLQSFIKI |
| Ga0272431_10000039299 | F102181 | N/A | MKEIMIIIHVHALYQTLLSCIQSIFVLLIFKYVKKLLESRSNEDNDKICKKMNDEKRLIVQDLCNDLSYYCKKLRIQLYINXKIENDE |
| Ga0272431_10000039317 | F086377 | N/A | MIQHFXDQKQRILILDCDSIQILIVHAEAKFFFEFLDEENRDDYLKVTDLNEIFAQILI |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |