NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272431_10000307

Scaffold Ga0272431_10000307


Overview

Basic Information
Taxon OID3300033181 Open in IMG/M
Scaffold IDGa0272431_10000307 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)124192
Total Scaffold Genes150 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)92 (61.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F061401Metagenome131Y
F081945Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0272431_10000307145F006206N/ALCKLDEILLKENYFEKSFLIDAHLISQNQSFSLCSLIDSDSVIYMIIYSNLVNKVCEKLKIQSISLAKEKLIKDYDEKISKKIITHKILFNLIIEVHKKLTVSMLIADIDHHEVILSKL
Ga0272431_10000307146F061401N/ALNNDQRVIREIKNKIKRVNDFSKTIFHRATVVTQSVDHSKSDQLKSRDAISTSVKEADILVESCFICHKSDHSSKECLNRSTRINAVNNEYDRFDFNSNFDSKN
Ga0272431_10000307148F081945N/AMFSHSFTEEHFKRFRNHFSQISDADSLKSRTKSSSAASFIHEDDESFAETIILLVFYEI
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