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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033181 Open in IMG/M |
| Scaffold ID | Ga0272431_10000362 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 113872 |
| Total Scaffold Genes | 133 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 72 (54.14%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.6 | Long. (o) | 161.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006206 | Metagenome | 378 | Y |
| F044226 | Metagenome | 154 | Y |
| F048019 | Metagenome | 148 | Y |
| F059497 | Metagenome | 133 | Y |
| F102179 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272431_10000362102 | F044226 | GAG | MIEFSKNFNIFLIISMTSFYFNKNFHSRMSFNSDTTDYKTTREHLEARKANDIII |
| Ga0272431_10000362105 | F059497 | GAG | MFIKDIDRKIIYNTQCELDVINVFSVDEMTQNLEDIKVKLSSKYQDFLDVFDQAQADKLSSHHSYDHKIELTSDATSLCCRAY |
| Ga0272431_10000362106 | F006206 | GAG | LCSQIKVLSKENYFEKSFLINASLISQSNSFSLRFLINSDFIVYTLIHDKLVNKVCQKLEIQFILLAKEKLIREYDEKLARKIITHKILLNLTIESHKKLTMSMLIANIEHHEAILSKL |
| Ga0272431_10000362118 | F102179 | N/A | MFVHNVSENISTCSAMHVKSMLLRIMTLTVQETHLNEVYFLKDKISQLKSTTSRSTDIETLIHRNYIIIKKQLNSVAETVDCKQLILHAIVKVLIIHEMIYNFSSKFVVELIKILQQENEFAVKLKVSETMSI |
| Ga0272431_10000362126 | F048019 | N/A | VNEYAFELFFAQVFVKALQDESTVYALVMINVVEESIVEHQVKAMNNVMSCITNALETQILLVELKKYKDVFLTESVNKLLLHEDHDHAIKITAESSYESLYNLLNKLVILRQYLDDVLAKE |
| Ga0272431_10000362128 | F102179 | GAG | MSVHSVNENTSTCSAMHVRSMLLRVMILTMREMHLDEVHFLKDRISQFESTTSRSINVVTLIYKDHNVVEKQLNSVAEIVDCKQLVSHAIVRVLTIHEMTYNFSSKFIVELIKILQQEDEFAVRLKTNETTSI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |