NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272431_10008516

Scaffold Ga0272431_10008516


Overview

Basic Information
Taxon OID3300033181 Open in IMG/M
Scaffold IDGa0272431_10008516 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11977
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053676Metagenome140N
F098338Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272431_100085163F098338GGAGGMITEMAIGCGLVIGAALSLALRHGASVVAGLVLDALNGWGRETCPPHQ
Ga0272431_100085167F053676AGGMSEDTWDRALGDIFAALDRDAAAERQLIALTPLLSDEQILRAWAYLAHDEASRWRARGALAHEALQRVVGRAERDGRGTAAVRQLAAALGIEPGRVYRLAQIHGVIEGGALDAGIVEVLPEMVWYDEALAAPDPAAALGYAADQVTAGRPYRPTDFRRDIRKVAAARGQPARERPPSPQVRLRVTRRDGSCWPAAEAVAFDLVDIAAIEVETPWGRAVLAIDGQGHIDADVRQED
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Institute for Fundamental Biomedical Research
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