NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334722_10024481

Scaffold Ga0334722_10024481


Overview

Basic Information
Taxon OID3300033233 Open in IMG/M
Scaffold IDGa0334722_10024481 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5085
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001731Metagenome644Y
F003195Metagenome501N
F033723Metagenome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0334722_100244811F003195N/AFTTIRPNYFVPGQSVIVTGAGTYNGTYTVTDDRIEPFTFTAATAAADRTYPLPFIPSALATLSGSSAAQLYASTPPIENAILVVSVEIFQSITAPGNQIMADNFQPSPFVLGRSLTNRVVGLLGPFLDVEAMCQ
Ga0334722_100244817F001731N/AMTIFNPVWRVTIGGVQYQTAILANLTITSGRTNIYEQAQAGYTSLEIINLDQSNVLIGINDSLTIELQDSTATYVPIFGGSVVDVGISVAEVGSVDYAQRINIIALGALARLPKALTDGVLPHDFDGDQIFTILSQVLFAQWQAVPAALTWATYDPTTQWQDAENTGLGEIDRPGNYELAQRSSSRTDVYSLVAALASSGLGYIYEDAQGQIGYADSTHRTNYLATNGYVNLTANQALASGLSIQSRTGDVRNNITIQYGQNSNNETDASDAASIALYGELSQIFTTTLRHLHDAQDQAAFYLALRAYPRFNFNNITYELTNPELDDADRDDLINVFMGMPVDIADLPLNMNSGDYLGFVEGWTFSARYNQVSVSMILSPIAFSLQAMRWNDVPVVEQWNTVNPTLDWVNATIVA
Ga0334722_100244818F033723AGGAGMTNPTSNYGWQMPTATDLVTDLPADFEVFGQAVDTAMAD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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