NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334722_10043999

Scaffold Ga0334722_10043999


Overview

Basic Information
Taxon OID3300033233 Open in IMG/M
Scaffold IDGa0334722_10043999 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3573
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057368Metagenome / Metatranscriptome136N
F067743Metagenome / Metatranscriptome125N
F085616Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0334722_100439995F057368N/AMNKQTCIDELIETFKNRLEYLIHIDDYDSADAIYSEFVVNGIEPEHGEYIWLFVPNLSRSNSPNKSL
Ga0334722_100439996F085616N/AMSFTKTQEQKQERWARIAELEVLNKVMTRAQTISDRNKQKKATLLAEKAEKVLNSLTPSARVSKAPMGTNLLSQEDKAPAPDANTFLPNKKKVDQLAVKANQIIDDILKG
Ga0334722_100439997F067743N/AMTITTTAVPIEIAAELSQKALDYITELVEGTYALEDILQFITEYNSDDFIAYYVDYVEQGEKVGFDVVDAFLEENDISDVARVEDVYMGEYESVADFAENYYNDIMDVPDSLVIDWKETFYQSLSHDYHYVKGHMKGYVFQSNW
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