NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334722_10053409

Scaffold Ga0334722_10053409


Overview

Basic Information
Taxon OID3300033233 Open in IMG/M
Scaffold IDGa0334722_10053409 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3177
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001279Metagenome732Y
F002302Metagenome573Y
F014973Metagenome / Metatranscriptome258N
F020346Metagenome / Metatranscriptome224N

Sequences

Protein IDFamilyRBSSequence
Ga0334722_100534091F020346N/ALWRSRGSLENVFASFDNMGAAPQQSMTPIVKQLLGIDRPAVA
Ga0334722_100534092F002302GGTGGVPAPYTDLFNEALDDLSATLTAVTGLRVVTDPTKLVPNCVFITAPSFTTIAGNGNIVRMDYPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA
Ga0334722_100534094F014973AGGAMRLKLKVDLQDGVQPVELTTNMFVICEWEKTEGRKISDGKGIGYTDLVCWAYNLLKLSGQKMPATYSDWVKENPNMTIEAIDETDPNLTA
Ga0334722_100534095F001279GAGGMPASTTIEIVGVKQTINSLRKIDPQLQKDFKADATAIAAPALKAAQDVYKVFAVKLPLSGMQYKWREQGRDRLNFPFTVAKAVNGVKVRFDTRRGAVGVILIEQKDPAAAIFETAGRANSNKLGNALGFVGAGRTRIIGPAVYKARRGIEAEMTKMIAKTMRVVQSEI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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