NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334722_10315001

Scaffold Ga0334722_10315001


Overview

Basic Information
Taxon OID3300033233 Open in IMG/M
Scaffold IDGa0334722_10315001 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1139
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009142Metagenome322Y
F073252Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0334722_103150012F009142N/AMNQSVQINIEDAIEGLLAHVPNLNTYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVDISVDYSDTAAKISQEDFDNTYCQIFEAFYEETPPLFTKIQNNILDTKVYTARITSQTPTIRTAKRAWQRGLRISVICTPSELDDGLRFLDFSEQRNSMYVGVI
Ga0334722_103150013F073252N/AVTVQATISGEELVPFSGVFKTPASITYVARADTTARADFDAKFYDILEQLYRDPDLASYLTDHSNITFYVAKVTGDNPAVIGQNRTWSRAMTLDITATAKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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