NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310914_10123612

Scaffold Ga0310914_10123612


Overview

Basic Information
Taxon OID3300033289 Open in IMG/M
Scaffold IDGa0310914_10123612 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2254
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008409Metagenome333Y
F067323Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0310914_101236123F008409GAGMWQLIAIVLIAIIWFYLGAIYLTVVAWLNAVGHLLQGHFTRAAAWFCVGVGMLLWWNGTETIPHPWDFDAWLKASAWVVGLGALATVARFYNGHRRAAKAVPPLEPAPFEPAPVVNINIKLDISPTADRRAVHDDLAALASALRGAIGTEQGPRRISGPTVN
Ga0310914_101236124F067323N/ARVCRVPLVQHDVSMMRANLLAGIAALLIATSAAHAEDLDWDKLHAATVALYGECDLNISIAGRERLRVRSYCSKDDRTTFDADDYLVFTEYKNRERYHNGEKICPRPVRVDDVERVNRVTFTVFVRCEETGKAGGLVFKLEGDTLHILNNTSF
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