NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000002

Scaffold Ga0326728_10000002


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000002 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2463942
Total Scaffold Genes2574 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2085 (81.00%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003063Metagenome / Metatranscriptome509Y
F006925Metagenome362Y
F032903Metagenome178Y
F038000Metagenome167Y
F053661Metagenome141Y
F066899Metagenome / Metatranscriptome126Y
F071201Metagenome122Y
F079538Metagenome / Metatranscriptome115Y
F084412Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_100000021643F084412AGGMTKDVTLDPQPVLGALHYALMCLEKGDTAGAKHGIHEALFRMGFTEDNLRITPKERKELERQKARLYAKLAKDTEMVAARQKHYAAIAYDERKISDVDAVKAKSEGEIARVMDDKSESDICREFRAYRTSISNLFEDRAEKYRKLEEMHLEKAKTMRA
Ga0326728_100000021647F071201N/AMPVPKPKANESERDFISRCEKFMHEENKSKPESEKRSNEQISAICYSEWRERKK
Ga0326728_100000021705F003063GGAGLVLEAGNVFKIAMAYSRVREFLTSKGWEFRGKDEEMEMDSFRNKKTGKKLFVEDISEDFPVTFLMGELSLPEFSNIASELTPEIQLLEVDSSWEGKPTTIVVAMTEEQVRSMFGRRTKMRKLAVQRARYAR
Ga0326728_100000021711F079538GAGGLLSAKDVRKCRNSSELNDFIEKYIAERNSPNESFNSTYWNLYEEWKKTLKNKPLRR
Ga0326728_100000022407F038000N/AMQNLLNPCLEDNCYAEGEIIGDHRCENCGKMFYTRYVQYTGKCLCPECRGKSGAAKKEKEYGEAKEYWETRKKEVRDS
Ga0326728_10000002552F032903GGALGWVFSQMSDEAVCLERKLLVPDATVEDVALACQKAFKEMGLRVMKTERTKDGSTSELAGEGALVPLILRTLLYPFSIQQYVEAAQRSGVHVVISPSKEGTIIYSCGLALDEITGKPAKTLSEDDMDDITNTLEALNFENKFIKKIKELFPKTKEIE
Ga0326728_10000002678F053661GGALEATREEVGKVVDWKDYYQTNKGRLLGIGGILIVVGLVVYFARGQEVALVLPVVGIVLFIAGVLYKPRKKKTENITSDSP
Ga0326728_10000002780F006925AGGMVEVDILENFGREAEQRKKWLKQWQLLGTRILRFPKWMQAIILEDVNTAIENRVATMEMILRSKKQT
Ga0326728_1000000293F066899GAGGMNQKDTAAKVPVDMEKCLRISKKILELLQKKTKNSAEAYLTVRLLGIFLEEKLKFKLASDQEEELRKMWRKDQNMPEKSEGLN
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