NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000005

Scaffold Ga0326728_10000005


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000005 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1269636
Total Scaffold Genes1346 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1021 (75.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014730Metagenome / Metatranscriptome260Y
F020727Metagenome / Metatranscriptome222Y
F034976Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_100000051287F020727GGAMKYQVLVKTISGKGGEFWGAFNKMPTEPMKGVMVESSWSLYGYWDFVIFFKADSNENSLHFIGEVLRAMPGIADTSTSPMTVLKEHKKQ
Ga0326728_10000005698F014730N/AMGEDILKIYEAMVFKREIRTRSGLDAKMIDTINDGVILSIDENLVNSNDLLLIKNFVDQNKLSLLIDSERYFISTNALKASSQSICDI
Ga0326728_10000005979F034976GGAGMVSNPVRCQKCGKPVGYVTVLAKGVLGRQQPVENVKVIAICMECAG
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