NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000007

Scaffold Ga0326728_10000007


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000007 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1029384
Total Scaffold Genes856 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)559 (65.30%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Associated Families11

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000131Metagenome / Metatranscriptome1986Y
F000633Metagenome / Metatranscriptome971Y
F000634Metagenome / Metatranscriptome971Y
F000858Metagenome / Metatranscriptome858Y
F000873Metagenome / Metatranscriptome851Y
F001371Metagenome / Metatranscriptome712Y
F003185Metagenome / Metatranscriptome502Y
F014422Metagenome / Metatranscriptome263Y
F017344Metagenome / Metatranscriptome241Y
F032049Metagenome181Y
F033229Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000007141F000634AGGAGGVPATASKAAPTTKPSIKILYGESDEKVLAGHAAEMTKAGHQVTTALHRQGVLDQLKSGKYELVILGSTLSKDDRHHLPYMVKKTAQGTKVLVMHAAARHHEVDAVVDSGMSMVFLLDKIAAVVQTTGR
Ga0326728_10000007160F000873GGAGMKDIHEVLRRKQAQHALLGKQIEMLQQAADKLREVAPLLAENDEEESAVLTEVSEENGKTMAASAGAPSGPAPKAGRSVTPRWP
Ga0326728_10000007284F000633N/ALSGFRKEENELRFEINGQMFFVNFVPEEGRWYCYAPTATGMQKIAVSMDSTPFDSFTMQQDEQAKEVIN
Ga0326728_10000007441F033229AGGAGMYSTKSLNGFPAIQRNGQNVLSVWGHDWDFANEICELLNSFEGDPDVFLTEHDRKWLKAMDRAFSRKVQHV
Ga0326728_10000007449F032049AGGAGMFHMIQSRLSVALALLTIVIMVASAQTQRQSETFSIQGYTGRANIIRSQGRALVDAQDLARITKGGLSFEGNRIILTLPRREQAVNDAGEAGFSPAFRKAAIEAMAQIREWGGMLQVIVQNGYPVGKAMVGNTVRAYQGRAADSIALAAAAASTDSDQRGVELLKNEFNNLQAWAQSFVDARNSMRAVELTTSENPLDNDPDAQKIISCGQFLAQMFGGGAFQDDAACH
Ga0326728_10000007505F003185GAGGMKTLLRWTFIIAVCALLKVGIARAQESPKPDSNASVTIVTAGDISITKANGKTAVVINFVPGKATTGDTRITITGPYSIDANGGVKEVKGPQGVELHVLDHEELRLEAPEIATWEHTHKFTEFTACSKIPTFPACGHPVCDQFGHPKDQCRYNSESGCACVAPGGGPCAETATETMQEQNSNEHAKLPIQKAGN
Ga0326728_10000007537F000858AGGAGMSSNPYLFSAYAVTWLIHIVYLTTIVRRYSRLKREVDELKK
Ga0326728_1000000754F001371N/AMMNQTIEPVRKATLRKAIVSDLAVGLICADRDGNRIRIDRVDPVSADAAGVAYHFLNDELRVQEGIQERSIPNFLAEGWYISTTTSL
Ga0326728_10000007556F014422N/AMSIKLLPALVNPVDPSQVSDGSNGIVPLTPRAVITQAGQSILVPSGDTFSWSSSARQGGANWIDGTFVEDSQSNATASAGEYVSGLAGSRPVASTAIAHYLFYSAAPAAWSGRLIDVYA
Ga0326728_10000007719F017344N/AMTTMETTAGRRQLSLPEDLCATAQRKFAAQFESLESLLEFVLRELTRDDAEALDQAEQAVLEQRLRDLGYI
Ga0326728_10000007749F000131N/AVTEKETGKLRRNKIGEDESGKNEIRQKKNSMGKASAIVALLMASMVSFARAEPISLQALVTPSTVVTKDGQPVKFAVHAFIEFNSLSELFPYIDAQTRRWKGTLTKEQQTQLAKELLRRGVESRVLSMEDERPLETLLTHTREELAEALARVKEPVPEGYSDAFLAVQEKWKHSLNCWSAAPSIPARVLSNWYPIEEGITLYGAKYDSTEHFWQAVKYHPEVSVADLNGLLSALEQRDWSPWLAWLDADATIYLPNAYAIEFLRQNLQHERLEWFRAELAKQNLSPSDRVRAVQQRGSESFRFTAYEEKVLWGDLADLFHLVYSFSPNDDPIRKTLAARHFDAIYLGDRKLPFIGEEFRGLMLEIWRVKYLEMPRFREVISSIPLEIHLSHFLNDGDSPDIPIPVYVDYLNQIRELARAKSGK
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