NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000040

Scaffold Ga0326728_10000040


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000040 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)498225
Total Scaffold Genes433 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)345 (79.68%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002885Metagenome / Metatranscriptome523Y
F002959Metagenome / Metatranscriptome517Y
F003571Metagenome / Metatranscriptome479Y
F003741Metagenome / Metatranscriptome471Y
F006028Metagenome / Metatranscriptome383Y
F009348Metagenome / Metatranscriptome319Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000040119F003741GAGGMPEESKHSEKSGLAWTCQGVSPLGEPCDSAASLHCDICGRSFCAVHAEDEAWHTCVLGPGDEGGEA
Ga0326728_10000040139F009348AGGAGGMPTKDKGHSAITSSDQKLVLSSLEPEQLAGLKKHFIPRRHLRGPEKFVIWSLRIYLLFMVVVVIYQVWASLH
Ga0326728_10000040207F006028GGAGGMTDPEILDRILQNCSFRFRNVLCPNKGKIAHITAVKFQGEDEDWSVEECSLIPDDEVRCAMSCILRDFDPAH
Ga0326728_10000040294F003571AGGMTLDLKPEIAAALEALASANGLSVEGYLEQLVEKELPLKLEDATRSEGSGMVWENGLFVYRTGRPLPLRVVDDAIRQVREERAQHILGKHS
Ga0326728_1000004066F002959GGAGGMDNQVPKYVTKARAAYLLGLPMEELSRISQQAGIGHMERAGNEEEWFFTYEELQKICVFATQEPVTVF
Ga0326728_1000004075F002885AGGAGMEWIRRILNIPATETQSGIVLAFCIFAMCVMSIILVWQAQIIAKQNAVIRMFEGRLGS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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