Scaffold Ga0326728

Basic Information
Taxon OID	3300033402 Open in IMG/M
Scaffold ID	Ga0326728_10000043 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033402 Open in IMG/M

Scaffold ID

Ga0326728_10000043 Open in IMG/M

Source Dataset Name

Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	488187
Total Scaffold Genes	426 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	337 (79.11%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

488187

Total Scaffold Genes

426 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

337 (79.11%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: New York

Coordinates

Lat. (^o)

42.5488

Long. (^o)

-76.2662

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000515	Metagenome / Metatranscriptome	1062	Y
F001701	Metagenome / Metatranscriptome	649	Y
F024360	Metagenome / Metatranscriptome	206	N
F031942	Metagenome / Metatranscriptome	181	Y
F032376	Metagenome / Metatranscriptome	180	Y
F033872	Metagenome / Metatranscriptome	176	Y
F038327	Metagenome / Metatranscriptome	166	Y
F053619	Metagenome / Metatranscriptome	141	Y
F065417	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000043106	F053619	GAGG	MMSKRHGLWFLGLLLLAFSTAWGQDSAGQEPAGATPGGTPQQPVPAYGQDNSPPLVSDNPPISGLDLPNLQPHAAPLSYLQAGVHASQSVDSNIANSLGGSSTQSISRAEGSVELQRLWSHYDLSLDYLGGVGYYNVRGIGLKQVEELGFYQKTTWKRGELGIRNAFSYQPEGTFGSAYGAVGAEGAGLGEVASFFGGTAFGALGQVPRIMDVTLVDGVESLSPKSSITVTGGYGFLHFLQNDPETNTSFIGSSQVSGELGYSRVLGPHDQGAVVYGYQGFHFSTGVTFHGHVVQLMWGHRISGRMDLLLGAGPQFTQLNHLLVPVNQPNSSACVGKGLTLECPSNDLRISAAGQARLRYQFPKVGFAASYKHFLTSGSGFFAGAESDIVTLDATRPLGRVWNVFTDIGYTHNTRVTPSACLSANCSGVSANTYQYGFVGIGAHRNFGRNFHSYISYQFNELAFDSSFCGLAGACSRTSQRQVGTIGLDWTPRPIRLD
Ga0326728_10000043156	F033872	AGGAG	MQSCVIQDSNFRGNIELSSQSRHSFYRYSLWRANSGEHLFDGAAGDRAEALDTMRAHIRYLSAGEGLAARE
Ga0326728_10000043245	F065417	GGAGG	LRKLALLAPIFALLFTCHFAAAQQGDIMFFGGTLLSSSPSASDLLSGNIAEKGGTYLGVSGDVVGFGHRLGFNIETSWRASQANYLNQDVNYRPILTDFNALFQPKLGKRIGADLFGGIGIASTRFYFPYVTGGNPYTGYSNYTTSDHFMEDLGGGIRYYVWHHFFVRPEIHYYHIQNNTSSSSSGAGFSSGNVFRVGASIGYTIGND
Ga0326728_10000043265	F000515	N/A	MTHFPQPHPSKRAARVQLGDSVLAAIRLEDGRRTKAKLQSISVTGGLLQLQHPLGTGSFVELAFQTQSGPVHGMAELLTPMRKTATGVLQPFRFVAFEDDDHRRLRTSVDHVTDRNLLGLKSSVFVVPKTI
Ga0326728_10000043289	F001701	GGAG	MNAVKYLWAAYIATWLIHGIYLGSIARRYGRLRQRMKDLGKREE
Ga0326728_1000004348	F032376	GAG	MPGDPHSGSKVWKAPNGEISKPGENRGKVIAHRDLQPTAAFHDRENRRDLWSRLGAAYVYPVLSTQSDWSH
Ga0326728_1000004350	F038327	AGGAG	MRHSRRMSSTPLIAGLLTGLLFAILVVPLNAEDSDSRYDVSKEVTLTGTVSSVLHKPAPGMIWGSHLIVETVSGRLDASLGRFGLEGKGALSVTPGQQIELTGVMKTVRDKEVFEVRSVKANGQTHTMRNEHGIEVSPQARERAAEKGVTL
Ga0326728_1000004352	F024360	GGAGG	MHSKTFFWSVGAWVLVLALSAAGQDWPGWHYSGVINDYPVSANPTAGPWELRGPWSLNLQRFGTADFSASLTMEFSDLGSGSGFSTDARHQHTHHIKMKGATVVWNPPQTDCPTGITPFPTYTWVLEVNGTADVTGNGGSPFTGPVPLQVCLGGGPDLEISNITLVFTNLSTGPSQATDHFGPQAIHGVVRLPKEPE
Ga0326728_1000004388	F031942	GGGGG	MNSRTYKKLSTQPLLKSKATRGGTPSKFAMFTAVAVIALATVSRAGELPEAPSSSIMRMSPAMIEVAAPVSTPRIAESNPVVDKKFMSLAFISTSSTFADSYTTLFARQNWLAGKKGVCNEEVESAYLYGTHPTVARTYSVAAAKSVGSAFAAYYLRKHHSKFWSAPLIVNSVISLQGVTQNMIMCN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326728_10000043

Overview

Ecosystem & Geography

Associated Families

Sequences