NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000114

Scaffold Ga0326728_10000114


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000114 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)324618
Total Scaffold Genes275 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)193 (70.18%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000634Metagenome / Metatranscriptome971Y
F000873Metagenome / Metatranscriptome851Y
F001355Metagenome / Metatranscriptome716Y
F009823Metagenome / Metatranscriptome312Y
F063426Metagenome / Metatranscriptome129Y
F093330Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000114155F093330AGGAGMRVAFHQPGVTGDVDVAEEKGATPLHRLDGEGWITGAQAQATKGLGMVAVGFGSDEFTVRGATPKVGAAGMEEGAGEGAEREDELAGIAALKSGPGKIEEKLLEGLLRLRRVSRPRISGMGCQWAPIA
Ga0326728_10000114172F001355GGAMAYPITKRSPCAVCGLDTFRHTGWFLVVENRWLDRLKILSWHPSLASQKDMKSVCCRQHLKALIVHWLTEASLRLPPAHDPPLPIGSDATLTDADLDPNSVGRLVGELAVYRESFSRVWSGSPAALECILDALITIGAENKPHALECQLFDLPTESSRGLSLQ
Ga0326728_10000114257F063426AGGMAQEISVSYHAVKSKVYRLIDALVADEKSEADVQESIRRWWALIHPADRPIAQKYLLTVLGRSVSALGAIEDGLTSSNGREVTYGPLPSERMKVVERIVKEAGVSSAV
Ga0326728_1000011429F000634AGGAGGVPATAHQPDHPSASPSTIKILYGESDEHTLSAQAAEMKKAGHRVTAALNRQGVQEALRRDAFDLVILGATLSKDDRHHLPYMVKKAHAGTKVLVMHAGTHHHEVDAAVDSNLSMHRILERIAALLQPEPVR
Ga0326728_1000011461F000873AGGGGGMKDIHEVLRRKQAQYTQLGKQIEMLQQAAEKLREVAPLLAENDSEDDSAVLAEVDEENSNAMAAKASAQSSPAAPKPGRSVTPRWP
Ga0326728_1000011485F009823GGAGGMRPYLVLAAVVLMAVAAFGQQPVPYPGACFYGCGPYIPMVTTPQVSLQQFSPNPVGATNATTGLIAGATNSTLSQIQGSTSSTYTVAVWEQGGGAPLITPDVNLWPEPIGREGRVMHDAMRGTVREERPREERAPRAEARGSWMYFTGREHTASAVLTGSEAKGVRKADHVYNNDDVTRQNDSNGNVKYDGKTEKM
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