NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000190

Scaffold Ga0326728_10000190


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000190 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)254276
Total Scaffold Genes235 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)171 (72.77%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000482Metagenome / Metatranscriptome1089Y
F003855Metagenome / Metatranscriptome465Y
F014165Metagenome / Metatranscriptome265Y
F021431Metagenome / Metatranscriptome219Y
F026320Metagenome / Metatranscriptome198Y
F077547Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000019017F000482N/AMPFSRAHLAIALGPPGLLVLVFLGYLHWLGNQPPVLSRSVERDPLTQMPVSITMNPLRDRTIERTANRFISGMRDGNCRQLLADWEKDYRKKRANFLCTSEAQHPLISWNLVEWEDAPPLVVLHYKGERYSTPSQESTYKDLFSVTEEKKDEGWTVTKYDSFY
Ga0326728_10000190174F026320GGAGGVNKRDDLKDVIREESSRGQKRPIDTDAINEQTERRDAVLRILRRGTREDLRSLLKTWGYSKEEIEAALKEYDAALGQQSF
Ga0326728_10000190175F014165AGGAMAVAKLKRQKEDRFEELAERIAAEINERAARMTPEERARADSETKKIAAQAQRRTP
Ga0326728_1000019021F021431GAGMPDFIFDREEERQRVRQRLAKKRPFLIHGPAGVGKTFLLCRLLPEFPSILYCEDSATTHTVFRSLAHSLLRLRNPRAQTAFRNEEAITTKSAVSLKGIVLDALHEGQYSIVLDHLKRPSYSFAAAVREIMGWGSTPVSAVARSSHMEDTGFLQPLYSDRSEKYEIRNFENAVAGQFAREVVARANLTASNMTEFLDKVVEFSEGNPGAMVALVESAKNPKYRSDEHIKIAPLYIDFRMNWSTAVQSR
Ga0326728_1000019028F077547N/AMAIELDAWLKGNPYAPDLAEAPDGWHKFFDSFTVCGEGACIKTLYTIYAPGNPRPNSVNLEEWEKRGR
Ga0326728_1000019078F003855GGAGMTTELHLLRNVGHDWAEPFTVAEKEALERGVAKIVALGAETGVGADQMIELLMSGLTVSELLAYLAARSGEID
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