NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000246

Scaffold Ga0326728_10000246


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000246 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)217885
Total Scaffold Genes201 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)119 (59.20%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003353Metagenome / Metatranscriptome492Y
F005675Metagenome / Metatranscriptome393Y
F031599Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000024672F003353AGGAGMKTTLLLALVLMSVSVAVAAPLGIYQHGTVVRMRMGDCALTHRGFMTTFGPPQAATDEGTCPEYVLVTDKVVFVIVGKSSNQLVPLAEVIDFRIQNKELAVRVDDARHESKFAIKEMSLRSEWDLIQKHIEDQLNDAHNHPMDTSLALRTRE
Ga0326728_1000024684F031599AGGAGMVNGQQLTPGEYQLRWEGAGPNVEVSFLLGKKEVAKASAKVVELGRASDNNIAVVDRSSGKATISEVRFIGKKYALAIGATEKAEMSEGTSK
Ga0326728_1000024695F005675AGGAGMWISEHETYIHWNWIAIFSHAAAMVFSLAIWREVFRAVQLLVK
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