NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000354

Scaffold Ga0326728_10000354


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000354 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)185511
Total Scaffold Genes153 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)103 (67.32%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000634Metagenome / Metatranscriptome971Y
F001643Metagenome / Metatranscriptome659Y
F001718Metagenome / Metatranscriptome647Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000354151F001643GGAMEIQVSQGELMLGELMNIPTVTLIDMLCVILTGEVVLTANGAVEIEQIQRELQRRGEGLERNFQTIH
Ga0326728_1000035426F001718N/AMTTSGDRLIPERAPGGDGVSYALAVVFGAGAGWIDIKVGDLLLTAMVVLASCMLLGFMSPRKPWRWVLLIGVFIPVVEWLAYFFLSQKPDRAQVYESFLAFVPGIAGAIGGAVGRGVVDNLFPKK
Ga0326728_1000035435F000634AGGAGGVPATAAKTGTKATIKILYAECDEKVLTDHADAIQKAGHHVTTALSRQGVMEVLRRDAFDLVILGSTMSKDDRHHLPYMVKKAHEGTKVLVMHAGTHHHEVDVAVDSGISMVLLLEKIAALLQPVGTV
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