NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000615

Scaffold Ga0326728_10000615


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000615 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)137093
Total Scaffold Genes118 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)98 (83.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000828Metagenome / Metatranscriptome872Y
F001567Metagenome / Metatranscriptome670Y
F007333Metagenome / Metatranscriptome353Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000615110F000042AGGAMQNIKFVVKVNRGGAHAPQYVLRIDKLPIQTTTNRKLALVMGRFTAEDAAKSMQNSHCNPELVSVRVSA
Ga0326728_10000615116F000828GGAGMSIFDEQYRVVAIEGDRLVVRGILSGDVLTIINPEPETPLTQGEYPPGKLIALTDPSAAPLN
Ga0326728_1000061532F001567N/AVNRLSVFVAITLVGVADMERSLIWIGDDDKGWGCSNCRWRFPVPTLLTGEEAKGAYDRLAAGKFGEHKCGAGASFFAAEPGTKRDAGASFAERARMLIKRGYTPKIAVEIVFHEMEFEEGHNSRMMEQARADAEDFLLRLGKGLI
Ga0326728_1000061562F007333AGGAGGVQQELHHARSLCLSVALGAIMGAAVGAATGHTGVWGAAGIAAYIAISLVGGAWKHERN
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Institute for Fundamental Biomedical Research
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