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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033402 Open in IMG/M |
| Scaffold ID | Ga0326728_10000671 Open in IMG/M |
| Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 130432 |
| Total Scaffold Genes | 115 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 78 (67.83%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000250 | Metagenome / Metatranscriptome | 1458 | Y |
| F001273 | Metagenome / Metatranscriptome | 733 | Y |
| F002746 | Metagenome / Metatranscriptome | 533 | Y |
| F014816 | Metagenome / Metatranscriptome | 259 | Y |
| F046736 | Metagenome | 151 | Y |
| F105036 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326728_1000067116 | F105036 | N/A | MTNILDQVARSSAAARYNQFQPSDQREYFALRLAQKLDDAVAVRHYVELAEHYSEAQLLSAYRRAKATGSHLDPARSFHLELKRLEGRPCDGPAIRRLAAIRIERRAVAVAILEGEHLAAPPQVRQLSSNSDKALGSAASFVSRILEKYPLGTVALETIPCETEVLRGDLMEIISRVLVEENVGIWEVPKLDVLASFAHPHPRFRNQVRQVISAIWPGINGSFGAPLVKDALALGLYCQIEHLFNL |
| Ga0326728_1000067117 | F046736 | AGG | MSFTLVHVAHLLGHQDASALSDYERGKHTPSLANALRLGIILRVPVEFLFPALYDGLRNEIRAEEERLAAPQQATLF |
| Ga0326728_100006714 | F002746 | GGAG | VRVRDLGTRTAPASIRELFSRVVRGHAPAIPVQRRQIPYWQERGWTQTGSRYTGPYQTPYAAFQGWIEQHRSGQIDFFLYLPSDEIRRHSHWTCFQHRGNDWYLIHMGKEPKDVGSGIMTIERLITEAYEQ |
| Ga0326728_1000067145 | F000250 | GGAGG | MSKTEAGLFKYPGLAKQVALIALLLTFSAFARDHSALNGIWTLVPARSDFAGQSVVQTGTVTISDRQGIIIVSRSFVYEGAGETFFYKDITDAENDATIHTGKDLTSKTRWDHDVLRVTTTQSGAVTLESYTLSADGTMMVSVVRPGRKPVTLVFHRE |
| Ga0326728_1000067149 | F014816 | AGAAGG | MEAIFLTDDELKRLEARFGPVVRQMGPWNSDGTFGYASVPVVAVEKATEALANRDLLTALARLRTPEGTTTFIELLGDFGPALVERIVDAYREFSLWPGPPVSMYTRNTS |
| Ga0326728_1000067152 | F001273 | GGAGG | MRIDLYTKTILTLIALLLAVFTLKPILQPQGAMAQGSYAGIQFSYSGGNHAFFNANTGDVWEYGDHGNFRNHYKVRELGKDHGR |
| Ga0326728_1000067156 | F014816 | GGA | MEAIILTDDELKRLETRFGPVVRQMGPWNSDGIFGYASIPLAAVEKAAETLANPDLLTALPRLRTPEPTKTFIELLGDFGPALVERIVDAYREFSLWPGPPVSMYTRNTS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |