NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000678

Scaffold Ga0326728_10000678


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000678 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)129777
Total Scaffold Genes126 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (56.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000780Metagenome / Metatranscriptome895Y
F001734Metagenome / Metatranscriptome644Y
F003010Metagenome / Metatranscriptome513Y
F008261Metagenome / Metatranscriptome336Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000678124F000780GAGMNGEIENEKAKGKSGTKPANSFSHLMCRSPLWGVAGFLGCAYFTWISFGHVARNEYEWPHDAWTAATYMVWILLLAWLALDTRCLRERVVFSVLVINFAIGFGLTLWRNIPSADVRNVRIGTGALWALAGLVSLTTVGKRKGDPGESSKG
Ga0326728_1000067823F003010GGAGMAKKNALLESIPMLVLLGLLAGIVGGAGVGFIQLRAMNSSASSTAGK
Ga0326728_1000067826F001734GAGMRPKLPNLRWLALSALFAALFPMAASAQDDAPSLGDLARNLRNSKSQQQTQLQPNTAPSSAPTEIPTVIDNDNLAQAIEDAKKARPVKQDKTVLSIDPASNTVKVSSPDVTCSLSFNARASALLIKPVLVEDLPLPELLKIDGPGSIQDANLDLEVFNGTDWDLREITIGLTFERKPGENAEVAARARVIPAAQAMEPATVERRSDVTLLYHLKAAAKPFSTTSFHENIGITPGPDEDWRWSIVEAKGIRPAAAQPAPDLQSDAKSDPLFAAPSSLLPVSNQPPLAPAAPAVPGQPAPDKASLDKALSPGSTQQR
Ga0326728_1000067827F008261GGAGMRIWRLCYAALGMAVARWVFRRQAMAVADPIARFRASGLL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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