 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033402 Open in IMG/M |
| Scaffold ID | Ga0326728_10000953 Open in IMG/M |
| Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 106944 |
| Total Scaffold Genes | 100 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 92 (92.00%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 11 (100.00%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001558 | Metagenome / Metatranscriptome | 671 | Y |
| F001596 | Metagenome / Metatranscriptome | 666 | Y |
| F001643 | Metagenome / Metatranscriptome | 659 | Y |
| F003233 | Metagenome / Metatranscriptome | 499 | Y |
| F004823 | Metagenome / Metatranscriptome | 422 | Y |
| F006278 | Metagenome / Metatranscriptome | 377 | Y |
| F006399 | Metagenome / Metatranscriptome | 374 | Y |
| F006672 | Metagenome / Metatranscriptome | 367 | Y |
| F010114 | Metagenome / Metatranscriptome | 308 | Y |
| F014420 | Metagenome / Metatranscriptome | 263 | Y |
| F048483 | Metagenome | 148 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326728_1000095314 | F006672 | AGGAG | MTAADMLPGESNGHIISSIINLVCPQCGGRMSEFQCEGRCGRNWLAEWEWVNLATRSSKSRLRGHAAHRMR |
| Ga0326728_1000095318 | F003233 | AGGAG | MKTRQILITILTLATVWHTAAARPKKKNIQADAPPLESILAGTSMQSNPVLSDLIAPKPEMPPGPLDVLNAYEIAMSMVADKTSADFSAIVQAQQANQITREQAEYLLQQIYQMAMMQYQVLSALHEVLKHDIDEASQQGTYSLKTSSSNTVLVVPFPGSVSAYR |
| Ga0326728_1000095327 | F001558 | GAGG | MLRVQTQELDGTLICRLEGRFTGKGAEEVRTLVTRCDSKLELVVDLTEVMFIDAIGEEVLLFVKRLGAQFVAETSYSRDICERLHLPFIGKRKSNMQVPRNSDAGASSSPAMIKHT |
| Ga0326728_1000095346 | F014420 | GGAGG | MSESAEDLRNWRGLYKAALFETDTSKLPWRIEEARKALIFRARELFRTAPNYDGETEAMENALYALQALENCLRSNTKDRRHVPRAG |
| Ga0326728_1000095354 | F010114 | GAGG | MIIELNDDETRLLYNVLLEQAQEHFSYASTSEVAERLYKLATRFWRSARERPNITIA |
| Ga0326728_1000095355 | F001596 | AGGAGG | MSWFHLSTAAVDTRNYASPAEIVACFQDQRNVLGRLAFLITGDQATADRAVVQACEMTLQGNSPFRDWLFEWAKTATIASAISHGTEAIRICEAAYKDRRCPHVEHLSQGDAEERAASLEIILGADSQKLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLAANCHALTWLHERHVKLVEVNRDASHAV |
| Ga0326728_1000095356 | F006278 | GAGG | MFRAEIQWLASGPTLKLEGKLVADWAEQARCLVTKDVLPKGLIVDLTEVSYIDSAGEQLLKWLAGVGALFVAGSVYAFAVCDRLRLSPMQRIAERRKRRHGNNEERSSIRHSHPVEAI |
| Ga0326728_1000095357 | F006399 | GGA | MATPSLNSSVQSLVTEYGVFWQFWPQFEQTHGERRLVGFEVELIGSHTSDLSHVDPACPTCRHVRSVLLAIADLMPGELTLSRNSLTYNIDSHSNSIVCLPALGNRSAVRVSIDVFLNRANGQSLETDLLNEVKTFLNRWDIHQR |
| Ga0326728_1000095360 | F004823 | AGGAG | MYATKAINGVPAIQRDGQTVLNVCGQNRDFANWLCALLNELGRTSELLLNEHEREWLNGNDRAFGRTVQHA |
| Ga0326728_1000095370 | F048483 | AGGAGG | MCSPLLTLQAAPTSASLVQGACCDICPPVYESCKARFRSLRMNWVVVTDTNGNRRLKMHWRAIQ |
| Ga0326728_1000095372 | F001643 | GGAG | MNIPTDTLIDMLYIILTGDFAITANDVAEIEQIQCELQRRGGEQRWSFQAVN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |