NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10001041

Scaffold Ga0326728_10001041


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10001041 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)101233
Total Scaffold Genes89 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (80.90%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003461Metagenome / Metatranscriptome485Y
F006683Metagenome / Metatranscriptome367Y
F068013Metagenome / Metatranscriptome125Y
F069206Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_100010415F003461GAGMAKTNQVSIPYLDPSVHHVGISRLRAWTTQLRELDKTLVIQDNDKPLAVLLKYEHFLAMQEKILKGEEQ
Ga0326728_100010418F069206N/AMKFFQLDHPPNVTVLCDRKGCEQVADYLEVDDHGHENRVCAMHTDSKTHVSRLPTRKPSPDLPFLSRPAA
Ga0326728_1000104184F006683GGAGGMNRPDRADVRQVNVKVNGITFGSVWLRRSSGANDFDIVIDDPQIGRFALTRAVPDLELRDEDSDWRQVTLDELKKILADEGELADTAEERQVFEVAERESFNRLVAEGEHIMNAEIALFRAGIPFLQLPFQQNKFGSNLFMVMSVPKARVCLQRAGFQTKFDSETVLFDGCNGQAVQLIQGKYRLPKAKS
Ga0326728_1000104185F068013GAGGMSDKHKDERFNESLVRCRDRVLTAWACASLLRPDLDPRGKEKLAKKIVKMAESKDHRLGITPAQAQEIVLSNVQCIAKNCPLLIFADPLARELNAFFQEDT
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