NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10001160

Scaffold Ga0326728_10001160


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10001160 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)95175
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (73.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008273Metagenome / Metatranscriptome336Y
F011792Metagenome / Metatranscriptome287Y
F013823Metagenome / Metatranscriptome268Y
F091202Metagenome107Y
F097751Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000116011F091202GGAGGMLFAVHPIFRKLARPAALALALFSLTFLLQVTPHVHANGQDEATCGLCQVAHLGVTPAVAVISLSIPIVSFGQVAIRTEVSLAETPCGHSSSRAPPFSFAS
Ga0326728_1000116068F008273GGAGGMNTNNAAIRQDLIENSVGHQVSTLTSSAASPGQLETLLNSELDHDLIEWPRQYLETYLDSDATGRVPLNPEQLQDVLEAAFDRDGTAARDYLEELNGERGPTNLGDSTLQIVTRRGEGKDKSYELLFDPTDSEDLKHLIEQLDIRAWEKQNAQNTPALETKPDIERRETTASVATHQPGSGAVEIHDKTTGTDVRRLLGGGQLPAGLQSALKKMGPNALVKDAQTDSGIYRGAITGETDKKVIQQITSRIVVLHPKDLLDILPAVGENVRIAYSNDRASVVPVKDRSKTQEVGR
Ga0326728_1000116074F097751GAGGMRSLLAMLFYIDHKCDTQPAFRKTFLVFTLIFVLLLWSPWRPLLCPVLGVCPAPNVRADTAPEPKSIPHLAKHKKKIAPSPDRVPAESSDQVAVQP
Ga0326728_1000116086F013823AGGAMENRKQQCGKDSVHDASAFSSVLFVTVAAILVGAALSLVPGMGMSRMVFPGAERFALAVMVLGFSGVLVTALLNLPDMTRRTLVVLFAAALLCSGFVALVVWFAVSGASGRWL
Ga0326728_1000116097F011792GGAMNQLVNSALLVFYSKGGETKLKKPAKGRGSSVHSYDTMSEAERRELHQMLAELSAMQSVPFEAEEPNGSYYEYDRNLKATVKVTPDGERTPVEKLEAGFEPTRGKVPRKIAREEIRT
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