NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10001334

Scaffold Ga0326728_10001334


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10001334 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)87969
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)80 (85.11%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000612Metagenome / Metatranscriptome985Y
F001364Metagenome / Metatranscriptome713Y
F002102Metagenome / Metatranscriptome593Y
F003000Metagenome / Metatranscriptome514Y
F003228Metagenome / Metatranscriptome499Y
F046501Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000133425F003000N/AMKADAKLGEMHDRLVDFHRQNSREGLGDVLVMWVKDPLKPRDEHGRLRVNPILLLLAIVFALVFGIFLVFSMVRL
Ga0326728_1000133428F002102AGGAGMSKDEKENQLKPESGALDKFGPGGELGPLDDRNEYQQRLNSLPPGQKELAEESTRFGDLCQYLSQQKMDIPPSIVERVGNVSKLPVMDRIRAMKDINRELMEYLNDVGQDPGIRQ
Ga0326728_1000133431F046501GGAGGMPPFSHLRSDYPLNLTLLERPYACALKQSYRAGLPSARALPVSLIVSNWWFLLRPHVDRAFDAQHYSGTIGRHFHSVEPRICTGSRTNFCSSACTPSTSESTCGLTHARALVREFRLNIDEQLAHLVEHWCASARGNSGPCYYALTLSLLSPNSAHYAVVAVHMLSTSGHHSPITTVLCPAFQMRNSTEGLHSGLSLSGVPISGQQRKSDQLKADQLRSDQLRRST
Ga0326728_1000133450F003228AGGAGMESESTTNRKSLSHEETAAKAAILADCEKFAAAGITFVAVHFDGSGDSGVTEDVKCFDSDYYAYDEHEPVGCDATHLQEHFDALVPLGYEDGCGGFGDVVLEVGARKITVERNDRFEDYTTSSYEV
Ga0326728_100013346F000612N/AMTDVPIIDQPRWPAMDAESTPAFLDFTLVFKSTDEPVIYEDPGRQYRFRGFKASAQLEARIRVPSIDFVFKTDSLETSKCDFAVMGTEVNGRYYEATKG
Ga0326728_1000133485F001364AGGAGGMLGGLLFVVCVILQFHYHDPIPWYIWVLALIAQCVAFGEPAMRSAASKKN
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