NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10001785

Scaffold Ga0326728_10001785


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10001785 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)74189
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000858Metagenome / Metatranscriptome858Y
F001591Metagenome / Metatranscriptome667Y
F003353Metagenome / Metatranscriptome492Y
F003876Metagenome / Metatranscriptome464Y
F012603Metagenome / Metatranscriptome279Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000178518F000858GGGGGMKMSGNPYLFAAYAVTWIIHIAYLGTIVSRYSRLKREIEALKKK
Ga0326728_1000178525F012603AGGAGLQTALLLVLTPLVVFLAIAPALAQNPLPNELLAKVRDGSNSTTVYTATAAPPVPLPATPAPQRVIDKKFIAVMGALGIAESLRFTTHKLVLDHEYAAGAPWVTSVPPNQHLIAKGAAIYAAELLVAYELKKRHAWLPGDRIVRKFWWAYPAAMAPIHIKNAVASIRTQAPSGCPVAECGS
Ga0326728_1000178530F001591GGAGMDRRKERRVNLEFPVRIWGVDRMAQPFAEMVRVRNVSNHGAVLIGVHSKVQTGEVLDVQLGASRTQFRIVWMNLSGEAGIQALAFEPPILGIGLPEVCEMVGTG
Ga0326728_1000178534F003876AGGMATTKIERAGVGFGIGRQGGSIVVDVRPHHDTISTLRGVQVGFELLNGIPIERAKKILDVLNENVIGVFVTTASDYETNDKTNDKTEAAAG
Ga0326728_1000178571F003353GGAMKFTLLLALAWISTGVSIVLAAPIGIYQQGTVVRMRMGDCMIMHRGFMSQFGPPQAAAIEESCPEYTLVTDKVVFLIVGKSSNQLVPLAEIIDFRIQNKVLAVRVDDARKESMFAIKEMTLRSQWDLIQKHIEQELNDPPRRPEDTSLALRNRQ
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