NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10002087

Scaffold Ga0326728_10002087


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10002087 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67973
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (72.46%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007294Metagenome / Metatranscriptome353Y
F025048Metagenome203Y
F030458Metagenome185Y
F031889Metagenome / Metatranscriptome181Y
F041367Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000208756F007294GGCGGMALTVQQLQANLDAVTQAIGGPTLKVRFPDGREVTYRSVDELLKAKAAIEEDIRRTSGQTGSRVRFAQHQRGDGPTGPTLSDRW
Ga0326728_1000208762F025048AGTAGGMLNASPITDAIAATLACIPDLFTAMAVTNAIGDLECRISAFHYRLGQEHQLAAAIYKMPAPSMLVAWDGTQGGNFDGQTIWKHRFHVYFRMGNAAGLDYPVGYEDLWWTVCNRPPTGSPVNIRYMTLYPGLDIMDTPSMAHALDEDQVDRFVGTFVIPEIGDQ
Ga0326728_1000208765F031889AGGAGMYGDIPAEGIAIRVPNPPKTALVRLPTNQEMLERLDRQKSIRRTIGRRKSQTEFVPNEKADLDLFVKIRLDKGAEFDEYEAANAISKLTYCEVTGCQRAGDEYRITVKTPFGATIHSVEIPTQRDITFYRRAVMSATDLPHGQEELRYRMEPAVALYDSVASKIEGYAASFKPADVPPHHKSAVVLELVQAIDELDPALDPNS
Ga0326728_1000208766F041367N/AVRAHELCDGGEEGPRGCPDANEVTCQVCGATCEVEDTAAPGECPQCGSRQFAVNRCARCPVNELEYVRAHSAAGRLFERMLELEFDCAHFAVPWGEVTAAEVKGLQVLQDERERYQRERQREKQPNAFPS
Ga0326728_1000208767F030458GAGMPFQAKITRARFVLGPFTAEDMQTIGGVLVDSISGRIRKAVNVNDDPAKVLKPGRNGRRGYPDYKAARGLQPIRDWVWTGRTMRSLKVKSANENRVVVGFVDPNADRVAHVNNLRERQFGVSPKDRSALNAIVLAILKRARVVRVVRAA
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