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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033402 Open in IMG/M |
| Scaffold ID | Ga0326728_10002163 Open in IMG/M |
| Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 66646 |
| Total Scaffold Genes | 65 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 59 (90.77%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000109 | Metagenome / Metatranscriptome | 2202 | Y |
| F003764 | Metagenome | 469 | Y |
| F004581 | Metagenome | 432 | Y |
| F004832 | Metagenome / Metatranscriptome | 421 | Y |
| F010440 | Metagenome | 303 | Y |
| F012741 | Metagenome | 277 | Y |
| F014350 | Metagenome / Metatranscriptome | 263 | N |
| F069592 | Metagenome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326728_1000216325 | F014350 | N/A | MATQLNPLEEHAAGANAGRRGSKAKGQQVEQTTPAETDFPYTAQDADPQQELDTLENQAEAPVRGSYLREKGGYDALSPEQKLACDKDFNSYLNRFTSPLESKVGETREEAILRAKREYCAARQEHTAHHREMAKTMLASKINCLNSEYPRNSFSLKNPDIAKEFLATAFYHNTTAAKGLTAFDKDVFAASRKAALREFSVLAASVETNGSATKVFNNAFALSIERPPIGAPSQNLRIAAEPLPEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRAARAMSTQELER |
| Ga0326728_1000216326 | F004581 | GGAGG | MQQHTEIYNGHARRFQQMARHIELSMTPRHQRENGGPDPISTNDITLATTLLNSVYGYPAGKQSVLALSAGLLPGEERSQTVRGLFRMTAACSEYDQTLTYTLLPLPGREIETANQLKATARYSIERAEAHSRQIPPPTRQPVQLER |
| Ga0326728_1000216331 | F012741 | AGGAGG | MLTPQSRNLLGVLSMTGSTGGIFQSLKRQTAAAGFIAYCGIITAVLGLWMWLWRDTIWQDKTLTRAVSAALVLAGFFFYQHLRRGFGAFFLILTSTGIGIAIHYSNHPVIHGNRPEIPAIALIAIGLIAYFAQTRYLPGFLFLLASSITIIGILCFNPAFFCPIVMVIAGGILILLGMLIRSLAMFNSFM |
| Ga0326728_1000216332 | F069592 | AGG | MNDNHRSHVVLSPFFAQNLVQRLEQLNSVDQFTDSLNLALPFALFQLFQTDTPVASSNESPALLGGRSLPRSGRAASFATHPSGMKPPQRPHSD |
| Ga0326728_1000216343 | F010440 | AGG | MTVAEAEEKLETLTRNLASSEISLSQRHKYEAQAARCHRFIQRARQKAHRSLASFAETLLGMAGNTVFDQNQNAALITAAHLIRCASIEQLAVAVPAAIREAPTSSTPPDGFKCPEFMETAECLLGMDNSTFSCECNVAIQTALKLGNIVGRQQIHQSVRRAQADRSELGPKGIVNRLTEICSAYRSDKPAPAPMPSNPKKATLLCTAPASEGHQ |
| Ga0326728_1000216344 | F000109 | AGGTGG | MTTAKKAPARTKRRIVAPVEKRTQIRLTVDSKFTKTHFTQLFAALGIRNKNALAEHIIMNFKTKTAQAQLVAFYNGPWLNIPFQSIDTAFVFPLTYEIADELERVGGEILGGVNRSKTFRIMVAYFASIHKLKTPIQTFA |
| Ga0326728_1000216347 | F004832 | AGGAG | MQIVYRNIRFSAKVDRCLRRRWRMHGDLSIRVREALDGVNLLDVALLEVDYRRVRATQVGVFESVWLAVHEAASARGCSLNTLVNSAVWAAFGAQRSGQRGRPCSRSQRGVPVPEVCSGE |
| Ga0326728_1000216360 | F003764 | GAG | MQIQPDSPYAYDENTAALLAGAEIEAAHLSRCLKIVRLWSQSRTLPRPRREELAEEVRRLANLYTAFLFEIGSAFGLRAADELKIHIEAACILEDWECPPAEQGLLFPIPEDSPTAASPAMPRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |