NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10002324

Scaffold Ga0326728_10002324


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10002324 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63903
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)77 (84.62%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000272Metagenome / Metatranscriptome1408Y
F000828Metagenome / Metatranscriptome872Y
F003876Metagenome / Metatranscriptome464Y
F004589Metagenome / Metatranscriptome432Y
F010830Metagenome / Metatranscriptome298Y
F031223Metagenome / Metatranscriptome183Y
F056021Metagenome / Metatranscriptome138Y
F087285Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000232411F031223N/AMEHPFQSLAKKEPKSDAELIAFLAVTRISNHLPISTVLSLPPSQLTPEQVYDSLIREACTLLDWYQDHIERRARKRAVLQGPTERPGHQRPHSP
Ga0326728_1000232412F003876GGAGMATTKVERAGIGFGIGRQAGSIIVELRPHHDTISALRGVQVGFELLNGITLEQAKKILDVLNENVIGVLVTTASGDKTEGAAG
Ga0326728_1000232413F010830GAGGMVSKLLQIMALTACLTPAWSKPTSEVPFSRQPSTVSIVGPGTVLSVHLLDLPFVKPRYVVKYKTDGGELIEVWTPGKDVLVLEGMHGILTYSTHPEKILSFRVVEQKFRE
Ga0326728_1000232422F000272AGGAGGMSQTVVEKTAEHIGESARRASCAASAVADAIEDGVGVVRRAAKQSGDAAEEILNDTTQRLQRHLLLTVATTFAVGITAGTLIGWMLRRR
Ga0326728_1000232429F004589GAGGMKKQYLHLSAYSCDKCAGPVVAGATAVRENEISKETDIRQVGAICLSCGHRQSKATEPGLSRSFPPTQWEPVKTVAARLVTTA
Ga0326728_1000232451F056021GAGGMKTYQHEFAHSYEHSKSIWRYSSASFLQSLTTALVLGTMAALIGVAMSAALYYHHVVWYISLAAGPLVDTLVVICLATIALEQARKRSIRRTLELSFLNHHVRNALTQMMMASNLTDAGTQDRFMREAVSRVSEALFRIANSADLTGLSLEVDLGGAELSHEGEEREANRGARTAG
Ga0326728_1000232452F087285AGGAGLLTKIIKWSAIAALIGGGFLYSDYSYRLLSQFVVVAAAAVVLTQAAKMRRYIWMSLFLLVVCLFNPVVPVPFSSYIFGLVTIFAVILFFFSLELLRPKSRLSIASITDRMPGSESL
Ga0326728_100023248F000828N/AMIPVKETEKSIFEEHYRVVAVKSDRLLVRGVLSGEVLTIVNPEPETPLTRADYPGKLIALTDPSAAPLN
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