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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033402 Open in IMG/M |
| Scaffold ID | Ga0326728_10004101 Open in IMG/M |
| Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 43811 |
| Total Scaffold Genes | 46 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (82.61%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003490 | Metagenome / Metatranscriptome | 483 | Y |
| F008672 | Metagenome | 329 | Y |
| F010661 | Metagenome | 300 | Y |
| F011724 | Metagenome | 287 | Y |
| F016487 | Metagenome | 246 | Y |
| F057832 | Metagenome | 135 | Y |
| F062368 | Metagenome / Metatranscriptome | 130 | Y |
| F083583 | Metagenome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326728_1000410111 | F008672 | N/A | MWTSYYNAGLSKQVVRQLIAVINRDIQAALDFVSGVPGSYAPFVEYDLALVPVQQFPALLLTPDTVSFEAEANLTLHQTMRLTCVVALTHQDRNTLAEITQDYVRGLRAVLDTLWESTPGDFLLTNLALPSPPFPSGALSPGLASGKLMKLFADRHTFEEIRAAAKSGFVMAATMSIVVEIEET |
| Ga0326728_1000410112 | F011724 | AGGAG | MSYCTVDDVCTAFPRFVRNAPNSIQDTQIQDWIDDRKARIRSALYARAIDPDSMALTPDQANFLRALNRDGAIADLGDALQGNISLQAGEESHASERRKSFERQIAEIKQGLYDKFFSLLAKTVEIEPTLGGTAGGETDRSTAFDRGENKAFSKDQVF |
| Ga0326728_1000410113 | F062368 | GGAGG | MAVSVSLTEQFIEETLAGPYIKNAKLTVTGLTVSGNNTVPHGLTDGKGNAVTPITVSIEPTSNNNFYEYQAADNTNIYVGVGSSAGTSCNIYVEY |
| Ga0326728_1000410117 | F083583 | AGGAG | MSDITAIDQSYHLNYNVEIGKFTCLAPDTTVYADGCNVPSGANGTFLGVAQESILPDAMADYSGGVYTLTSGTAWPTGAIPSSGLGRNIRTRLFGISRVVASGAISRGAYVNIANAQGQIKAVSEAVGTYINVVGLAIDAAVNAGDVIRVLVMPFTYKM |
| Ga0326728_1000410125 | F057832 | GGAG | MSKRLSRQHAQDGKGASEASPGKLPRPSDTKSSPTCPASAPKPADESAGGEKSGTADGAKVENDVTKLHPKLQSLVNKLLKEGSTFEDVVEGVNERGGQRITLHAVKSYFQGNRVLQTQRARRQVEDAEALLESLGKDPKSAEARLARATFMTGYSRVNRNASVVTPNEAARYRMQCENLNLKHQILMMQRERAKQELKYSKARTELIQATGVKMQGDLLKLERELEAHRAGDPIGPEILQRIQQLYGLACQPLLYEETVNAQAEARQSAR |
| Ga0326728_100041013 | F016487 | AGGA | MIQGNQTWTQALAQPQKQAYYTVEIPDFAIAIASFPSSANVVTTLGGYGVTLYGVGGYGT |
| Ga0326728_1000410139 | F003490 | GGGGG | MDTLVLLFAIWGVVTILFLALVFYRSRLTKKETDWIPLSDDAKEDQAIEAQKVIEVKTHRVTIPIRALGVLWVVMAVVILGFWFYHGIMTPPPIK |
| Ga0326728_100041018 | F010661 | AGG | MTKMNNIATAAEFRRFAEESAFEEPRRVVLPKSGYAVLLRRPTKFYWALRRSAWPRELREKLDLVGVGVRPELTADEMLLLVREDRQMLEEAFVEPKPCLDPGCAQFDPNWLPKEDAEFILKYLRGQVLANGQDLESFPGSEPGHAAGSGGHGALVREDAERNVAPTGGSVAS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |