NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10004190

Scaffold Ga0326728_10004190


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10004190 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43249
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (78.12%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F000451Metagenome / Metatranscriptome1124Y
F002261Metagenome / Metatranscriptome577Y
F003186Metagenome / Metatranscriptome502N
F015314Metagenome / Metatranscriptome255N

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000419016F000335GGTGGMPGNLVQSAPNGVMPASLCTAFTELREYVQLQNQFHDGTIQRSQLAQTSRRTFRLGKRLSASLLTALYNFWVSQDAGLTPFAFYNPFDVASGQQIGSNYDPTGNNTQGRVTVVFRGNWAQATDIARTNLQSLELVEVA
Ga0326728_1000419018F000451AGGMAKFQTVIKHARFVYSPYTATEMQGFAQVLADSIRQRIQAGQNIYDQAAAPLKPGLPGRRGYPDYKSARGLRPVRDWTWSGHTLRCLKVLTANENRAAIGFLDEALPGRRMTASQIAAFNNRREAQWGVSPHDRHAVLAAFQARPFVMLKAA
Ga0326728_1000419024F003186N/AMINPKTILGEWVTAFQSCPDLVTAIGGDVGNVRAFMEGLATDNNLRLAILQMPPGSMLVAWNGTTPRRLTGGALHFAHRFSIYLRAPEQNSTATYADLFWLLVSAIPTGAPSWASLLHFQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0326728_1000419025F002261GGAMPNWPSIEAFVDGVVAQTFGESVVYQPVQAGAAQGSAFTVTAVRHLRPRDESGATASFEEISVNPSDFENPPAKGDWVTAWGAQYVVTTVRQPDAYGMLNLALLQRS
Ga0326728_1000419028F015314GGCGGMMLRRESWARLTRGLVPPLYVLRPLQGFTPSDIGDEYPTPDAANKVQLTRARQLYEQRRIGTQAEAERALSGLPKQEPAKPGKEKRHGSQSGKNAR
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