Scaffold Ga0326728_10008909

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0326728_10008909

Scaffold Ga0326728_10008909

Overview

Basic Information
Taxon OID	3300033402 Open in IMG/M
Scaffold ID	Ga0326728_10008909 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	24506
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (77.27%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088421	Metagenome / Metatranscriptome	109	Y
F102318	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100089093	F088421	AGGAG	MRKLVVVLLFAVFAVVGLASHSGIANGQQKEAAGPKQHRWEGTIVRVNNDASYIDVRNVSGQVRKIQWDSSTAWTKLNKPVAHHSGFKPDERVICLGTYDEKGAFHATRIDLRLPK
Ga0326728_100089097	F102318	AGGAGG	MMGSSESGGIAGFSGSTQVFRQGLAILLTIALMGAETASAFAKESQAPDPSMVAAQVKKFGVGKAVKVKLMGGERVSGHIRSIGADAFTIKLSKEGGERVIPYAQVGEVKDPSPLTWMLVGAAIVIVIIVAAKR

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.