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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033402 Open in IMG/M |
| Scaffold ID | Ga0326728_10011526 Open in IMG/M |
| Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20110 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (70.59%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000335 | Metagenome / Metatranscriptome | 1276 | Y |
| F000451 | Metagenome / Metatranscriptome | 1124 | Y |
| F002261 | Metagenome / Metatranscriptome | 577 | Y |
| F003186 | Metagenome / Metatranscriptome | 502 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326728_1001152612 | F003186 | GAG | VINPKTILGEWVTAIQSCPDLVTAVGGDSNNIRAFMEGLATDNNLRLAILQMPPGSILVAWNGTTPRRLTGGALHFAHRFSIYLRAPEQNSTATYADLFWLLVSAVPTGAPSWSSLLHFQVDPNCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE |
| Ga0326728_1001152613 | F002261 | GGA | MPNWPTIESVVDGVMLQTFGEPVVYQPVQAGAAQGDPFTLTAIRHLRPREESGAVANFEEISVNPSDFSNPPAKGDWVTAWGTQYVVTTVRQPDAYGMLNLALLQRAS |
| Ga0326728_100115265 | F000335 | GAG | MPASLCTAFTELREYAQLQNQYHDGTIQRAQLAQTSRRTFRLSKRLSESLLSALYSFWVSQNAGLTPFAFYNPFDVASGQQIGSNYDSTGNNTQGRVTVVFRGNWAQATDVARTNVQGLELVEVA |
| Ga0326728_100115267 | F000451 | GGA | MPRFQTVLKSARFVYSPYSATEMQGFAQVLADSIRGRIQHGQNIYDQAAAPLRPGLPGRRGYPDYKAARGLRPVRDWTWSGHTLRCLKVLTANENRAAIGFLAESLPGRRLTASQIAAFNNRREAQWGVSPRDRQAVLAAFQARPFVMLKAA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |