NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10017466

Scaffold Ga0326728_10017466


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10017466 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14368
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003743Metagenome470Y
F006173Metagenome379Y
F011988Metagenome / Metatranscriptome284Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1001746615F006173AGGAGGMKLFELLPCVDLPGQRNLTVAPPIDLLVKQALARLERRPSRQWLDAVRDLETGHAVRLEVSLEELALLLERVDFSSSRLEDIEAMKFWSHLEASCELLEALGHEWSNHLGFDCHESFSLVWRVPEGMVGYLAWLARSARPVPTLPEELRYLNPRSKLAEVAARLLNTLAAHVNATI
Ga0326728_100174665F011988GAGGVTPVGEIEVEIVFRIALRGRAGDLTQLSEAVNKAHAVVVWLVEEPIASEEQGQKGVTTTAGGHSG
Ga0326728_100174669F003743AGGAGGMFGPVQVTKLFRLSKLDTVDEAVAKLLEFAEYPQIFRWFQFPAALVVFVAHADSPDSGAVYVYDRKKCVWLWVDFNDQNYGGYSPSEFDVLINQCHFFRLASSPALLESPVQWMITPGQGPKVLGRLPA
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